Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LMO2LIM domain only 2. (158 aa)    
Predicted Functional Partners:
TAL1
TAL bHLH transcription factor 1, erythroid differentiation factor.
   
 0.999
GATA1
GATA binding protein 1b.
    
 0.993
LDB1
LIM domain binding 1.
    
 0.976
LDB2
LIM domain binding 2.
    
 0.948
POLR2G
RNA polymerase II subunit G.
    
   0.928
POLR2D
RNA polymerase II subunit D.
    
   0.896
POLR2C
RNA polymerase II subunit C.
    
   0.893
GATA2
GATA binding protein 2.
    
 0.864
MYB
MYB proto-oncogene, transcription factor.
    
 0.849
LYL1
BHLH domain-containing protein.
   
 0.847
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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