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SNRPD1 protein (Latimeria chalumnae) - STRING interaction network
"SNRPD1" - Small nuclear ribonucleoprotein D1 polypeptide 16kDa in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNRPD1Small nuclear ribonucleoprotein D1 polypeptide 16kDa (121 aa)    
Predicted Functional Partners:
SNRPF
Small nuclear ribonucleoprotein polypeptide F (117 aa)
     
  0.999
SNRPE
Small nuclear ribonucleoprotein polypeptide E (93 aa)
     
  0.999
SNRPD2
Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa (108 aa)
     
  0.999
SNRPD3
Small nuclear ribonucleoprotein D3 polypeptide 18kDa (126 aa)
     
  0.999
SNRPG
Small nuclear ribonucleoprotein polypeptide G (76 aa)
     
  0.999
SNRPB
Small nuclear ribonucleoprotein polypeptides B and B1 (240 aa)
     
  0.999
LSM2
LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) (95 aa)
     
  0.990
SNRPA1
Small nuclear ribonucleoprotein polypeptide A’ (256 aa)
     
  0.987
PRPF19
PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) (504 aa)
     
  0.986
LSM6
LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) (80 aa)
     
  0.985
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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