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STRINGSTRING
ENSLACG00000001958 protein (Latimeria chalumnae) - STRING interaction network
"ENSLACG00000001958" - annotation not available in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLACG00000001958annotation not available (398 aa)    
Predicted Functional Partners:
PRPF40A
PRP40 pre-mRNA processing factor 40 homolog A (yeast) (902 aa)
     
 
  0.909
PRPF40B
PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae) (894 aa)
     
 
  0.904
SNRNP70
Small nuclear ribonucleoprotein 70kDa (U1) (457 aa)
     
 
  0.899
SNRPC
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5’ splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5’ splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5’ splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5’ end of the U1 snRNA and the 5’ splice-site region; Belongs to the U1 [...] (184 aa)
     
 
  0.863
SNRPD3
Small nuclear ribonucleoprotein D3 polypeptide 18kDa (126 aa)
     
 
  0.851
SNRPB
Small nuclear ribonucleoprotein polypeptides B and B1 (240 aa)
     
 
  0.810
SF3B3
Splicing factor 3b, subunit 3, 130kDa (1205 aa)
     
 
  0.803
SNRPD2
Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa (108 aa)
     
 
  0.796
TCERG1
Transcription elongation regulator 1 (1012 aa)
     
      0.779
ENSLACG00000007711
Si-ch211-114c17.1 (512 aa)
     
 
  0.777
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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