Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102358185VLIG-type G domain-containing protein. (858 aa)    
Predicted Functional Partners:
H3AF29_LATCH
Uncharacterized protein.
 
    0.826
HECTD1
HECT domain E3 ubiquitin protein ligase 1.
    
   0.708
TK1
Thymidine kinase.
      
 0.454
TOM1
Target of myb1 membrane trafficking protein; Belongs to the TOM1 family.
    
   0.448
TOM1L2
Target of myb1 like 2 membrane trafficking protein; Belongs to the TOM1 family.
    
   0.448
MRPS24
Mitochondrial ribosomal protein S24.
   
    0.417
TRAF3IP3
TRAF3 interacting protein 3.
     
 0.407
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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