Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EBF3EBF transcription factor 3a. (195 aa)    
Predicted Functional Partners:
H3A975_LATCH
EBF transcription factor 3a.
 
     0.932
EBF1
Uncharacterized protein.
 
      0.898
SCD5
Stearoyl-CoA desaturase 5; Belongs to the fatty acid desaturase type 1 family.
   
 
 0.501
SCD
Stearoyl-CoA desaturase; Belongs to the fatty acid desaturase type 1 family.
   
 
 0.501
LOC102348026
Uncharacterized protein.
    
   0.487
LOC102358575
Uncharacterized protein.
    
   0.487
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.484
PLAA
Phospholipase A2 activating protein.
    
   0.439
YOD1
YOD1 deubiquitinase.
    
   0.439
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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