Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SNX19Sorting nexin 19. (856 aa)    
Predicted Functional Partners:
ZNF513
Zinc finger protein 513.
      
 0.663
CREG1
Cellular repressor of E1A-stimulated genes 1.
      
 0.592
SNX8
Sorting nexin 8.
      
 0.548
SNX10
Sorting nexin 10.
      
 0.525
PDPK1
3-phosphoinositide dependent protein kinase 1.
    
  0.495
TXLNG
Taxilin gamma.
      
 0.471
NDRG3
NDRG family member 3.
      
 0.470
SNX18
Sorting nexin.
      
 0.452
PPP4R2
Protein phosphatase 4, regulatory subunit 2b.
      
 0.441
SNX1
PX domain-containing protein.
      
 0.420
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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