Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FAM78BFamily with sequence similarity 78 member B. (183 aa)    
Predicted Functional Partners:
WDR43
WD repeat domain 43.
   
 0.643
UTP4
UTP4 small subunit processome component.
   
 0.615
WDR75
WD repeat domain 75.
   
  0.590
ANKLE2
Ankyrin repeat and LEM domain containing 2.
   
  0.579
MDH1
Malate dehydrogenase.
   
  
 0.571
UTP20
UTP20 small subunit processome component.
   
 
 0.545
CASK
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
   
 0.516
MDH2
Malate dehydrogenase.
   
  
 0.495
LOC102356557
Neurexin 3a.
    
 0.490
H3A3Q1_LATCH
Uncharacterized protein.
    
 0.490
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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