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KHSRP protein (Latimeria chalumnae) - STRING interaction network
"KHSRP" - KH-type splicing regulatory protein in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHSRPKH-type splicing regulatory protein (688 aa)    
Predicted Functional Partners:
PUF60
poly-U binding splicing factor 60KDa (366 aa)
     
 
  0.804
SNRNP70
Small nuclear ribonucleoprotein 70kDa (U1) (457 aa)
     
 
  0.703
CPSF6
Cleavage and polyadenylation specific factor 6, 68kDa (551 aa)
     
      0.702
HNRNPD
Heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) (309 aa)
     
 
  0.702
PARN
poly(A)-specific ribonuclease (529 aa)
     
  0.679
SNRNP35
Small nuclear ribonucleoprotein 35kDa (U11/U12) (279 aa)
     
 
  0.653
KHDRBS3
KH domain containing, RNA binding, signal transduction associated 3 (164 aa)
     
 
  0.622
EXOSC2
Exosome component 2 (293 aa)
     
  0.614
CPSF7
Cleavage and polyadenylation specific factor 7, 59kDa (449 aa)
     
      0.603
EXOSC5
Exosome component 5 (198 aa)
     
 
  0.559
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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