STRINGSTRING
AMD1 protein (Latimeria chalumnae) - STRING interaction network
"AMD1" - Adenosylmethionine decarboxylase 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMD1Adenosylmethionine decarboxylase 1 (333 aa)    
Predicted Functional Partners:
SRM
Spermidine synthase (290 aa)
     
 
  0.966
SMS
Spermine synthase (311 aa)
     
 
  0.965
MAT2B
Methionine adenosyltransferase II, beta (341 aa)
     
 
  0.940
MAT2A
Methionine adenosyltransferase II, alpha; Catalyzes the formation of S-adenosylmethionine from methionine and ATP (391 aa)
     
 
  0.911
MAT1A
Methionine adenosyltransferase I, alpha; Catalyzes the formation of S-adenosylmethionine from methionine and ATP (391 aa)
     
 
  0.911
DNMT3A
DNA (cytosine-5-)-methyltransferase 3 alpha (658 aa)
         
    0.900
DNMT1
DNA (cytosine-5-)-methyltransferase 1 (1273 aa)
         
    0.900
DNMT3B
DNA (cytosine-5-)-methyltransferase 3 beta (742 aa)
         
    0.900
ODC1
Ornithine decarboxylase 1 (464 aa)
     
 
  0.610
AZIN1
Antizyme inhibitor 1 (258 aa)
     
 
  0.610
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
Server load: low (7%) [HD]