STRINGSTRING
DDX39B protein (Latimeria chalumnae) - STRING interaction network
"DDX39B" - DEAD in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX39BDEAD (Asp-Glu-Ala-Asp) box polypeptide 39B (433 aa)    
Predicted Functional Partners:
ALYREF
Aly/REF export factor (258 aa)
     
  0.994
DHX8
DEAH (Asp-Glu-Ala-His) box polypeptide 8 (1211 aa)
   
  0.988
THOC2
THO complex 2 (1564 aa)
     
  0.966
ZC3H13
Zinc finger CCCH-type containing 13 (1785 aa)
     
  0.934
ENSLACG00000014983
Uncharacterized protein (148 aa)
     
  0.929
PPIE
Peptidylprolyl isomerase E (cyclophilin E); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (302 aa)
   
  0.915
SARNP
SAP domain containing ribonucleoprotein (222 aa)
     
  0.898
RBM8A
RNA binding motif protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs (177 aa)
     
  0.879
DHX38
DEAH (Asp-Glu-Ala-His) box polypeptide 38 (1221 aa)
     
  0.870
THOC3
THO complex 3 (322 aa)
     
  0.862
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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