STRINGSTRING
WDR20 protein (Latimeria chalumnae) - STRING interaction network
"WDR20" - WD repeat domain 20 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDR20WD repeat domain 20 (594 aa)    
Predicted Functional Partners:
USP12
Ubiquitin specific peptidase 12 (373 aa)
     
  0.963
ENSLACG00000010732
Ubiquitin carboxyl-terminal hydrolase 12 (369 aa)
     
  0.951
USP46
Ubiquitin specific peptidase 46 (366 aa)
     
  0.951
USP38
Ubiquitin specific peptidase 38 (1042 aa)
     
  0.939
USP35
Ubiquitin specific peptidase 35 (969 aa)
     
  0.939
USP1
Ubiquitin specific peptidase 1 (739 aa)
     
  0.939
WDR48
WD repeat domain 48 (677 aa)
     
  0.880
CDC16
Cell division cycle 16 homolog (S. cerevisiae) (545 aa)
     
  0.666
SYMPK
Symplekin (1203 aa)
     
 
  0.648
CPSF1
Cleavage and polyadenylation specific factor 1, 160kDa (1387 aa)
     
 
  0.626
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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