Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102362949Uncharacterized protein. (1612 aa)    
Predicted Functional Partners:
LOC102360596
Uncharacterized protein.
 
     0.929
CRAMP1
Cramped chromatin regulator homolog 1.
   
 
 0.820
SS18L2
SS18 like 2.
    
 
 0.748
SMPD4
Sphingomyelin phosphodiesterase 4.
   
  
 0.621
FANCM
FA complementation group M.
    
 0.605
H3AIP7_LATCH
Uncharacterized protein.
   
 0.573
LSM10
LSM10, U7 small nuclear RNA associated.
    
 0.572
MUS81
Uncharacterized protein.
    
 0.546
POLD2
DNA polymerase delta 2, accessory subunit.
    
 0.538
DDX20
DEAD-box helicase 20.
   
 0.531
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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