STRINGSTRING
SNX2 protein (Latimeria chalumnae) - STRING interaction network
"SNX2" - Sorting nexin 2 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNX2Sorting nexin 2 (520 aa)    
Predicted Functional Partners:
VPS35
Vacuolar protein sorting 35 homolog (S. cerevisiae) (790 aa)
     
  0.974
VPS29
Vacuolar protein sorting 29 homolog (S. cerevisiae); Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway (204 aa)
     
  0.973
VPS26A
Vacuolar protein sorting 26 homolog A (S. pombe) (326 aa)
     
  0.971
SNX5
Sorting nexin 5 (386 aa)
     
0.897
SNX6
Uncharacterized protein (423 aa)
     
0.895
VPS26B
Vacuolar protein sorting 26 homolog B (S. pombe) (194 aa)
     
  0.885
SNX32
Sorting nexin 32 (412 aa)
     
  0.868
WDFY1
WD repeat and FYVE domain containing 1 (410 aa)
     
 
  0.832
RTN1
Reticulon 1 (680 aa)
       
      0.802
RTN4
Reticulon 4 (767 aa)
       
      0.802
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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