STRINGSTRING
RFK protein (Latimeria chalumnae) - STRING interaction network
"RFK" - Riboflavin kinase in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RFKRiboflavin kinase (155 aa)    
Predicted Functional Partners:
FLAD1
FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae) (523 aa)
   
 
  0.972
BLVRB
Biliverdin reductase B (flavin reductase (NADPH)) (211 aa)
         
    0.900
CAD
Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase (2203 aa)
   
   
  0.621
YARS
tyrosyl-tRNA synthetase (528 aa)
   
   
  0.616
GART
Phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase (1031 aa)
   
   
  0.602
MEMO1
Mediator of cell motility 1 (310 aa)
     
      0.596
FARS2
phenylalanyl-tRNA synthetase 2, mitochondrial (453 aa)
   
   
  0.593
UFM1
Ubiquitin-fold modifier 1 (74 aa)
       
      0.590
YKT6
YKT6 v-SNARE homolog (S. cerevisiae) (199 aa)
       
      0.590
SLC25A32
Solute carrier family 25 (mitochondrial folate carrier) , member 32 (355 aa)
           
  0.523
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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