STRINGSTRING
SMPX protein (Latimeria chalumnae) - STRING interaction network
"SMPX" - Small muscle protein, X-linked in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMPXSmall muscle protein, X-linked (85 aa)    
Predicted Functional Partners:
TPRN
Taperin (783 aa)
           
  0.576
ENSLACG00000013559
Taperin (771 aa)
           
  0.576
PPP1R18
Protein phosphatase 1, regulatory subunit 18 (601 aa)
           
  0.576
ITGB1BP2
Integrin beta 1 binding protein (melusin) 2 (354 aa)
     
   
  0.534
TRAPPC2
Trafficking protein particle complex 2 (140 aa)
     
   
  0.497
ENSLACG00000016688
Uncharacterized protein (678 aa)
           
  0.463
ENSLACG00000000467
Uncharacterized protein (447 aa)
           
  0.463
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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