Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRAF2PRA1 family protein. (179 aa)    
Predicted Functional Partners:
ARL6IP5
PRA1 family protein.
   
   0.705
RAB19
RAB19, member RAS oncogene family.
      
 0.633
WDFY1
WD repeat and FYVE domain containing 1.
    
 
 0.584
TIMM17B
Translocase of inner mitochondrial membrane 17B.
      
 0.500
BUD13
BUD13 homolog.
      
 0.497
RABAC1
PRA1 family protein.
   
  
 0.453
YIF1A
Yip1 interacting factor homolog A, membrane trafficking protein.
      
 0.452
YIF1B
Yip1 interacting factor homolog B, membrane trafficking protein.
      
 0.452
SNCG
Gamma-synuclein; Belongs to the synuclein family.
      
 0.431
CCDC22
Coiled-coil domain containing 22.
   
  
 0.410
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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