LOC102356587 protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC102356587

Uncharacterized protein; Belongs to the peptidase S1 family. Plasminogen subfamily. (628 aa)

Predicted Functional Partners:

FGA

0.924

FGB

0.916

SERPINF2

0.894

APOB

0.866

SERPINC1

0.863

F2

0.839

SERPIND1

0.834

AHSG

0.826

PLAT

0.820

AMBP

0.810

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHSG	AMBP	ENSLACP00000020153	ENSLACP00000003553	Alpha 2-HS glycoprotein.	Alpha-1-microglobulin/bikunin precursor.	0.907
AHSG	APOB	ENSLACP00000020153	ENSLACP00000022987	Alpha 2-HS glycoprotein.	Apolipoprotein B.	0.800
AHSG	F2	ENSLACP00000020153	ENSLACP00000021404	Alpha 2-HS glycoprotein.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.965
AHSG	FGA	ENSLACP00000020153	ENSLACP00000007992	Alpha 2-HS glycoprotein.	Fibrinogen alpha chain.	0.958
AHSG	FGB	ENSLACP00000020153	ENSLACP00000008521	Alpha 2-HS glycoprotein.	Fibrinogen beta chain.	0.827
AHSG	LOC102356587	ENSLACP00000020153	ENSLACP00000002593	Alpha 2-HS glycoprotein.	Uncharacterized protein; Belongs to the peptidase S1 family. Plasminogen subfamily.	0.826
AHSG	SERPINC1	ENSLACP00000020153	ENSLACP00000018195	Alpha 2-HS glycoprotein.	Serpin family C member 1; Belongs to the serpin family.	0.811
AHSG	SERPIND1	ENSLACP00000020153	ENSLACP00000011889	Alpha 2-HS glycoprotein.	Serpin family D member 1; Belongs to the serpin family.	0.532
AHSG	SERPINF2	ENSLACP00000020153	ENSLACP00000003724	Alpha 2-HS glycoprotein.	Serpin family F member 2; Belongs to the serpin family.	0.571
AMBP	AHSG	ENSLACP00000003553	ENSLACP00000020153	Alpha-1-microglobulin/bikunin precursor.	Alpha 2-HS glycoprotein.	0.907
AMBP	APOB	ENSLACP00000003553	ENSLACP00000022987	Alpha-1-microglobulin/bikunin precursor.	Apolipoprotein B.	0.485
AMBP	F2	ENSLACP00000003553	ENSLACP00000021404	Alpha-1-microglobulin/bikunin precursor.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.969
AMBP	FGA	ENSLACP00000003553	ENSLACP00000007992	Alpha-1-microglobulin/bikunin precursor.	Fibrinogen alpha chain.	0.941
AMBP	FGB	ENSLACP00000003553	ENSLACP00000008521	Alpha-1-microglobulin/bikunin precursor.	Fibrinogen beta chain.	0.907
AMBP	LOC102356587	ENSLACP00000003553	ENSLACP00000002593	Alpha-1-microglobulin/bikunin precursor.	Uncharacterized protein; Belongs to the peptidase S1 family. Plasminogen subfamily.	0.810
AMBP	SERPINC1	ENSLACP00000003553	ENSLACP00000018195	Alpha-1-microglobulin/bikunin precursor.	Serpin family C member 1; Belongs to the serpin family.	0.939
AMBP	SERPIND1	ENSLACP00000003553	ENSLACP00000011889	Alpha-1-microglobulin/bikunin precursor.	Serpin family D member 1; Belongs to the serpin family.	0.564
AMBP	SERPINF2	ENSLACP00000003553	ENSLACP00000003724	Alpha-1-microglobulin/bikunin precursor.	Serpin family F member 2; Belongs to the serpin family.	0.651
APOB	AHSG	ENSLACP00000022987	ENSLACP00000020153	Apolipoprotein B.	Alpha 2-HS glycoprotein.	0.800
APOB	AMBP	ENSLACP00000022987	ENSLACP00000003553	Apolipoprotein B.	Alpha-1-microglobulin/bikunin precursor.	0.485