STRINGSTRING
RAB39A protein (Latimeria chalumnae) - STRING interaction network
RAB39A, member RAS oncogene family in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB39ARAB39A, member RAS oncogene family (213 aa)    
Predicted Functional Partners:
RABGEF1
Uncharacterized protein (532 aa)
     
 
  0.667
WDR41
WD repeat domain 41 (456 aa)
     
   
  0.576
ECI2
enoyl-CoA delta isomerase 2 (409 aa)
       
      0.554
COG1
Component of oligomeric golgi complex 1 (986 aa)
         
  0.524
COG4
Component of oligomeric golgi complex 4 (784 aa)
         
  0.523
COG8
Component of oligomeric golgi complex 8 (615 aa)
         
  0.500
COG7
Component of oligomeric golgi complex 7 (769 aa)
         
  0.499
SMCR8
Smith-Magenis syndrome chromosome region, candidate 8 (936 aa)
           
  0.479
COG6
Component of oligomeric golgi complex 6 (547 aa)
         
  0.449
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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