STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMEM107Transmembrane protein 107. (140 aa)    
Predicted Functional Partners:
B9D1
B9 domain containing 1.
   
 
 0.646
TMEM231
Transmembrane protein 231.
   
 
 0.623
TMEM216
Transmembrane protein 216.
   
 
 0.621
TMEM237
Transmembrane protein 237.
   
 
 0.595
B9D2
B9 domain containing 2.
      
 0.555
TMEM17
Transmembrane protein 17.
      
 0.544
NPHP3
Nephronophthisis 3.
      
 0.543
NPHP4
Nephrocystin 4.
      
 0.480
TMEM80
Transmembrane protein 80.
   
 
 0.467
RPGRIP1L
RPGRIP1 like.
      
 0.467
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.