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HSPG2 protein (Latimeria chalumnae) - STRING interaction network
"HSPG2" - Heparan sulfate proteoglycan 2 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HSPG2Heparan sulfate proteoglycan 2 (2595 aa)    
Predicted Functional Partners:
DAG1
Dystroglycan 1 (900 aa)
     
  0.967
FGFBP1
Fibroblast growth factor binding protein 1 (240 aa)
       
 
  0.895
NID1
Uncharacterized protein; Nidogen 1 (446 aa)
     
 
  0.885
FGF2
Fibroblast growth factor 2 (basic); Belongs to the heparin-binding growth factors family (155 aa)
     
 
  0.808
MXRA8
Matrix-remodelling associated 8 (436 aa)
     
   
  0.790
LRP3
Low density lipoprotein receptor-related protein 3 (692 aa)
       
 
  0.780
NID2
Nidogen 2 (osteonidogen) (1537 aa)
     
 
  0.760
COL4A1
Collagen, type IV, alpha 1; Belongs to the type IV collagen family (1669 aa)
     
 
  0.748
VCL
Vinculin (832 aa)
     
   
  0.703
BGN
Biglycan; May be involved in collagen fiber assembly (371 aa)
     
 
  0.699
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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