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STRINGSTRING
RCHY1 protein (Latimeria chalumnae) - STRING interaction network
"RCHY1" - Ring finger and CHY zinc finger domain containing 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RCHY1Ring finger and CHY zinc finger domain containing 1 (238 aa)    
Predicted Functional Partners:
HOXA2
Homeobox A2 (366 aa)
       
 
  0.929
TP53
Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression; Belongs to the p53 family (401 aa)
       
 
  0.878
GORAB
Golgin, RAB6-interacting (378 aa)
     
 
  0.815
HOXB2
Homeo box B2a (362 aa)
       
 
  0.787
FAM63A
Uncharacterized protein; Family with sequence similarity 63, member A (335 aa)
     
   
  0.745
SPATC1L
Spermatogenesis and centriole associated 1-like (362 aa)
           
  0.671
TVP23C
Golgi apparatus membrane protein TVP23 homolog; Zgc-112148 (200 aa)
     
   
  0.666
CPSF2
Cleavage and polyadenylation specific factor 2 (782 aa)
     
   
  0.661
PSMB2
Proteasome (prosome, macropain) subunit, beta type, 2 (199 aa)
     
   
  0.655
RFWD2
Ring finger and WD repeat domain 2, E3 ubiquitin protein ligase (702 aa)
     
 
  0.654
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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