STRINGSTRING
TGFB1I1 protein (Latimeria chalumnae) - STRING interaction network
"TGFB1I1" - Transforming growth factor beta 1 induced transcript 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TGFB1I1Transforming growth factor beta 1 induced transcript 1 (586 aa)    
Predicted Functional Partners:
VCL
Vinculin (832 aa)
     
  0.970
PTK2
PTK2 protein tyrosine kinase 2 (673 aa)
       
  0.965
PTK2B
PTK2B protein tyrosine kinase 2 beta (876 aa)
       
  0.965
CRK
V-crk sarcoma virus CT10 oncogene homolog (avian) (310 aa)
       
  0.944
PARVB
Parvin, beta (368 aa)
     
  0.885
PARVA
Parvin, alpha (372 aa)
     
  0.885
HSP90AA1
Heat shock protein 90kDa alpha (cytosolic), class A member 1 (725 aa)
     
  0.881
HSP90AB1
Heat shock protein 90kDa alpha (cytosolic), class B member 1 (734 aa)
     
  0.881
ENSLACG00000000733
Uncharacterized protein (730 aa)
     
  0.881
CRKL
V-crk sarcoma virus CT10 oncogene homolog (avian)-like (219 aa)
       
  0.862
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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