STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HERPUD2HERPUD family member 2. (409 aa)    
Predicted Functional Partners:
FAM8A1
Family with sequence similarity 8 member A1.
    
 
 0.574
ATF4
Activating transcription factor 4.
   
 
 0.533
TMUB2
Transmembrane and ubiquitin like domain containing 2.
      
 0.471
EDEM1
alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.
      
 0.445
AMFR
Autocrine motility factor receptor.
   
 
 0.441
H3BG62_LATCH
RING-type domain-containing protein.
   
 
 0.441
H2ZTK5_LATCH
Peptidase_M50 domain-containing protein.
      
 0.424
OGFOD1
2-oxoglutarate and iron dependent oxygenase domain containing 1.
      
 0.422
C7orf26
Chromosome 7 open reading frame 26.
      
 0.420
TMUB1
Transmembrane and ubiquitin like domain containing 1.
      
 0.420
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.