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DHX16 protein (Latimeria chalumnae) - STRING interaction network
"DHX16" - DEAH in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DHX16DEAH (Asp-Glu-Ala-His) box polypeptide 16 (593 aa)    
Predicted Functional Partners:
CDC40
Cell division cycle 40 homolog (S. cerevisiae) (574 aa)
     
  0.964
PRPF19
PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) (504 aa)
     
  0.958
CDC5L
CDC5 cell division cycle 5-like (S. pombe) (803 aa)
     
  0.950
XAB2
XPA binding protein 2 (848 aa)
     
  0.934
SNW1
SNW domain containing 1 (536 aa)
     
  0.932
CWC25
CWC25 spliceosome-associated protein homolog (S. cerevisiae) (319 aa)
     
  0.925
BUD31
BUD31 homolog (S. cerevisiae) (238 aa)
     
  0.913
SNRPA1
Small nuclear ribonucleoprotein polypeptide A’ (256 aa)
     
  0.910
CRNKL1
Crooked neck pre-mRNA splicing factor-like 1 (Drosophila) (684 aa)
     
  0.909
ISY1
pre-mRNA-splicing factor ISY1 homolog (282 aa)
     
  0.907
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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