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STRINGSTRING
ENSLACG00000002450 protein (Latimeria chalumnae) - STRING interaction network
"ENSLACG00000002450" - Uncharacterized protein in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSLACG00000002450Uncharacterized protein; DEAH (Asp-Glu-Ala-His) box polypeptide 16 (593 aa)    
Predicted Functional Partners:
XAB2
XPA binding protein 2 (848 aa)
     
 
  0.963
CWC22
CWC22 spliceosome-associated protein homolog (S. cerevisiae) (1120 aa)
     
 
  0.958
SNRNP200
Small nuclear ribonucleoprotein 200kDa (U5) (1764 aa)
     
 
  0.933
SF3A2
Splicing factor 3a, subunit 2, 66kDa (313 aa)
     
 
  0.930
SF3B2
Splicing factor 3b, subunit 2, 145kDa (892 aa)
     
 
  0.924
SF3B1
Splicing factor 3b, subunit 1, 155kDa (1308 aa)
     
 
  0.920
CDC40
Cell division cycle 40 (574 aa)
     
 
  0.914
CRNKL1
Crooked neck pre-mRNA splicing factor 1 (684 aa)
     
 
  0.913
EFTUD2
Elongation factor Tu GTP binding domain containing 2 (971 aa)
     
 
  0.912
RNF113A
Ring finger protein 113A (346 aa)
     
 
  0.910
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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