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SNRPF protein (Latimeria chalumnae) - STRING interaction network
"SNRPF" - Small nuclear ribonucleoprotein polypeptide F in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SNRPFSmall nuclear ribonucleoprotein polypeptide F (117 aa)    
Predicted Functional Partners:
SNRPG
Small nuclear ribonucleoprotein polypeptide G (76 aa)
     
  0.999
SNRPE
Small nuclear ribonucleoprotein polypeptide E (93 aa)
     
  0.999
SNRPD1
Small nuclear ribonucleoprotein D1 polypeptide 16kDa (121 aa)
     
  0.999
SNRPB
Small nuclear ribonucleoprotein polypeptides B and B1 (240 aa)
     
  0.999
SNRPD3
Small nuclear ribonucleoprotein D3 polypeptide 18kDa (126 aa)
     
  0.998
SNRPD2
Small nuclear ribonucleoprotein D2 polypeptide 16.5kDa (108 aa)
     
  0.998
LSM10
LSM10, U7 small nuclear RNA associated (130 aa)
     
  0.997
LSM5
LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae) (91 aa)
     
  0.990
SNRPA1
Small nuclear ribonucleoprotein polypeptide A’ (256 aa)
     
  0.982
PRPF19
PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae) (504 aa)
     
  0.980
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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