STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC113Coiled-coil domain containing 113. (379 aa)    
Predicted Functional Partners:
LRRC23
Leucine rich repeat containing 23.
   
  
 0.810
CCDC92
Coiled-coil domain containing 92.
      
 0.800
CCDC125
Coiled-coil domain containing 125.
      
 0.742
CCDC42
Coiled-coil domain containing 42.
  
  
 0.670
BICDL1
BICD family like cargo adaptor 1.
      
 0.623
KIAA1257
Uncharacterized protein.
   
  
 0.588
CCDC96
Coiled-coil domain containing 96.
   
 
0.573
LZTFL1
Leucine zipper transcription factor like 1.
      
 0.555
SDF2
Stromal cell derived factor 2.
      
 0.544
MLF1
Myeloid leukemia factor 1.
      
 0.538
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.