STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2ZZI0_LATCHPDZ domain containing 2. (2484 aa)    
Predicted Functional Partners:
PIM3
Serine/threonine-protein kinase; Proto-oncogene with serine/threonine kinase activity involved in cell survival and cell proliferation. Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. PIM subfamily.
      
 0.860
H3AHT3_LATCH
Uncharacterized protein.
 
     0.793
NAP1L1
Nucleosome assembly protein 1 like 1; Belongs to the nucleosome assembly protein (NAP) family.
    
 
 0.755
VGLL4
Vestigial like family member 4.
      
 0.752
ATXN1
Ataxin 1.
      
 0.669
IFT57
Intraflagellar transport 57.
    
 0.599
TRAF3IP1
TRAF3 interacting protein 1.
    
 0.578
CASK
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
    
 0.570
IFT80
Intraflagellar transport 80.
    
 0.565
IFT88
Intraflagellar transport 88.
    
 0.532
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.