Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CLK1CDC like kinase 1; Belongs to the protein kinase superfamily. (480 aa)    
Predicted Functional Partners:
ACIN1
SAP domain-containing protein.
   
 
 0.666
BCLAF1
BCL2 associated transcription factor 1.
    
 
 0.639
SRSF1
Serine and arginine rich splicing factor 1a.
   
 
 0.638
TRA2A
Transformer 2 alpha homolog.
   
 
 0.638
SRSF10
Serine and arginine rich splicing factor 10.
   
 
 0.625
TRA2B
Transformer 2 beta homolog.
   
 
 0.607
SRSF2
Serine and arginine rich splicing factor 2a.
   
 
 0.581
YTHDC1
YTH domain containing 1.
   
 
 0.572
RBBP6
RB binding protein 6, ubiquitin ligase.
   
   0.564
SNIP1
Smad nuclear interacting protein 1.
    
   0.560
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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