STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB29RAB29, member RAS oncogene family. (206 aa)    
Predicted Functional Partners:
NUCKS1
Nuclear casein kinase and cyclin dependent kinase substrate 1.
 
    
 0.810
GAK
J domain-containing protein.
    
 
 0.773
CHID1
Chitinase domain containing 1; Belongs to the glycosyl hydrolase 18 family.
      
 0.706
RILPL1
Rab interacting lysosomal protein like 1.
      
 0.685
RILPL2
Rab interacting lysosomal protein like 2.
      
 0.685
RABGGTA
Rab geranylgeranyltransferase subunit alpha.
    
 0.664
H3A535_LATCH
CHM Rab escort protein.
    
 0.663
PM20D1
Peptidase M20 domain containing 1.
      
 0.573
PDCD1LG2
Programmed cell death 1 ligand 2.
      
 0.537
GCNT1
Glucosaminyl (N-acetyl) transferase 1.
      
 0.537
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.