STRINGSTRING
RAB7L1 protein (Latimeria chalumnae) - STRING interaction network
"RAB7L1" - RAB7, member RAS oncogene family-like 1 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB7L1RAB7, member RAS oncogene family-like 1 (206 aa)    
Predicted Functional Partners:
SUGP1
SURP and G patch domain containing 1 (616 aa)
           
  0.552
NRAS
Neuroblastoma RAS viral (v-ras) oncogene homolog (189 aa)
   
 
  0.543
PM20D1
Peptidase M20 domain containing 1 (517 aa)
           
  0.538
NUCKS1
Nuclear casein kinase and cyclin-dependent kinase substrate 1 (295 aa)
           
  0.536
KRAS
v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog (189 aa)
   
 
  0.534
HRAS
Harvey rat sarcoma viral oncogene homolog (193 aa)
   
 
  0.524
PLEKHA3
Pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 3 (302 aa)
           
  0.485
LRRK2
Leucine-rich repeat kinase 2 (2508 aa)
       
 
  0.467
ANKRD27
Ankyrin repeat domain 27 (VPS9 domain) (888 aa)
       
 
  0.450
ENSLACG00000014754
Metabotropic glutamate receptor 5 (712 aa)
     
   
  0.425
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
Server load: low (6%) [HD]