STRINGSTRING
GATA6 protein (Latimeria chalumnae) - STRING interaction network
"GATA6" - GATA binding protein 6 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GATA6GATA binding protein 6 (503 aa)    
Predicted Functional Partners:
ZFPM1
Zinc finger protein, multitype 1 (1017 aa)
     
  0.743
ZFPM2
Zinc finger protein, multitype 2 (979 aa)
     
  0.743
ZNF488
Zinc finger protein 488 (528 aa)
     
  0.685
PRDM4
PR domain containing 4 (795 aa)
     
  0.685
PRDM6
PR domain containing 6 (519 aa)
     
  0.685
PRDM8
PR domain containing 8 (576 aa)
     
  0.685
PAICS
Phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase (1029 aa)
     
  0.662
BCL6
B-cell CLL/lymphoma 6 (728 aa)
     
  0.654
NKX2-5
NK2 homeobox 5 (296 aa)
     
  0.646
ZNF541
Zinc finger protein 541 (1385 aa)
     
  0.642
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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