STRINGSTRING
SMC5 protein (Latimeria chalumnae) - STRING interaction network
"SMC5" - Structural maintenance of chromosomes 5 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC5Structural maintenance of chromosomes 5 (1096 aa)    
Predicted Functional Partners:
SMC6
Structural maintenance of chromosomes 6 (1095 aa)
     
0.991
ENSLACG00000022174
Uncharacterized protein (246 aa)
     
  0.985
ENSLACG00000011504
Uncharacterized protein (269 aa)
     
  0.978
TOP2A
Topoisomerase (DNA) II alpha 170kDa; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1569 aa)
     
 
  0.949
TOP2B
Topoisomerase (DNA) II beta 180kDa; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1615 aa)
     
 
  0.949
RAD21
RAD21 homolog (S. pombe) (630 aa)
     
  0.941
SMC3
Structural maintenance of chromosomes 3 (1222 aa)
     
 
  0.934
NSMCE1
non-SMC element 1 homolog (S. cerevisiae) (265 aa)
     
  0.932
SMC1B
Structural maintenance of chromosomes 1B (1228 aa)
     
 
  0.891
SMC1A
Structural maintenance of chromosomes 1A (1234 aa)
     
 
  0.891
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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