STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GALNT3Polypeptide N-acetylgalactosaminyltransferase. (635 aa)    
Predicted Functional Partners:
FGF23
Fibroblast growth factor 23; Belongs to the heparin-binding growth factors family.
     
 0.779
GCNT3
Glucosaminyl (N-acetyl) transferase 3, mucin type.
      
 0.740
MARCKS
Myristoylated alanine rich protein kinase C substrate.
      
 0.664
SPDEF
SAM pointed domain containing ETS transcription factor.
   
  
 0.604
TOB1
Transducer of ERBB2, 1.
      
 0.578
PSMA1
Proteasome subunit alpha type.
      
 0.565
SCN4A
Sodium channel protein; Mediates the voltage-dependent sodium ion permeability of excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a sodium-selective channel through which Na(+) ions may pass in accordance with their electrochemical gradient.
 
    
 0.533
MYO1B
Myosin IB; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
      
 0.509
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
      
 0.506
SCN8A
Sodium voltage-gated channel alpha subunit 8.
 
    
 0.501
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.