Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RABGAP1LUncharacterized protein. (254 aa)    
Predicted Functional Partners:
RABGAP1L-2
PID domain-containing protein.
 
      0.900
EVI5L
Ecotropic viral integration site 5 like.
 
      0.899
H3ACN2_LATCH
Rab-GAP TBC domain-containing protein.
 
      0.898
RAB33B
RAB33B, member RAS oncogene family.
    
 0.508
LOC102354752
VPS9 domain-containing protein.
   
 
  0.502
RABGEF1
RAB guanine nucleotide exchange factor (GEF) 1.
   
 
  0.502
RAB6A
RAB6A, member RAS oncogene family.
    
 0.500
RAB6B
Uncharacterized protein.
    
 0.500
RAB41
RAB41, member RAS oncogene family.
    
 0.500
RAB43
RAB43, member RAS oncogene family.
    
 0.491
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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