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PDGFB protein (Latimeria chalumnae) - STRING interaction network
"PDGFB" - Platelet-derived growth factor beta polypeptide in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDGFBPlatelet-derived growth factor beta polypeptide (209 aa)    
Predicted Functional Partners:
PDGFRB
Platelet-derived growth factor receptor, beta polypeptide (1103 aa)
       
  0.959
PDGFRA
Platelet-derived growth factor receptor, alpha polypeptide (1094 aa)
       
  0.952
PDGFD
Platelet derived growth factor D (369 aa)
         
  0.937
PDGFC
Platelet derived growth factor C (243 aa)
     
 
  0.935
FLT1
Fms-related tyrosine kinase 1 (vascular endothelial growth factor/vascular permeability factor receptor) (1337 aa)
       
  0.916
ENSLACG00000013005
Uncharacterized protein (1220 aa)
       
  0.916
PDGFA
Platelet-derived growth factor alpha polypeptide (197 aa)
     
0.912
FLT4
Fms-related tyrosine kinase 4 (1394 aa)
       
  0.912
KDR
Kinase insert domain receptor (a type III receptor tyrosine kinase) (1339 aa)
       
  0.912
MET
Met proto-oncogene (hepatocyte growth factor receptor) (1385 aa)
       
  0.852
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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