UNC5A protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

UNC5A

Unc-5 netrin receptor A. (798 aa)

Predicted Functional Partners:

LOC102357170

0.998

NTN4

0.968

RSPO1

0.885

H3AGE3_LATCH

0.877

LOC102356949

0.866

NTN1

0.866

LOC102346244

0.866

H3AQC0_LATCH

0.838

H3ACM3_LATCH

0.804

SNCB

0.665

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3ACM3_LATCH	H3AGE3_LATCH	ENSLACP00000007394	ENSLACP00000008714	Ig-like domain-containing protein.	Uncharacterized protein.	0.900
H3ACM3_LATCH	H3AQC0_LATCH	ENSLACP00000007394	ENSLACP00000011841	Ig-like domain-containing protein.	Uncharacterized protein.	0.900
H3ACM3_LATCH	LOC102346244	ENSLACP00000007394	ENSLACP00000008799	Ig-like domain-containing protein.	Uncharacterized protein.	0.796
H3ACM3_LATCH	LOC102356949	ENSLACP00000007394	ENSLACP00000005653	Ig-like domain-containing protein.	Netrin 2.	0.796
H3ACM3_LATCH	LOC102357170	ENSLACP00000007394	ENSLACP00000012921	Ig-like domain-containing protein.	Uncharacterized protein.	0.774
H3ACM3_LATCH	NTN1	ENSLACP00000007394	ENSLACP00000007761	Ig-like domain-containing protein.	Netrin 1.	0.796
H3ACM3_LATCH	NTN4	ENSLACP00000007394	ENSLACP00000000565	Ig-like domain-containing protein.	Netrin 4.	0.774
H3ACM3_LATCH	UNC5A	ENSLACP00000007394	ENSLACP00000003003	Ig-like domain-containing protein.	Unc-5 netrin receptor A.	0.804
H3AGE3_LATCH	H3ACM3_LATCH	ENSLACP00000008714	ENSLACP00000007394	Uncharacterized protein.	Ig-like domain-containing protein.	0.900
H3AGE3_LATCH	LOC102346244	ENSLACP00000008714	ENSLACP00000008799	Uncharacterized protein.	Uncharacterized protein.	0.896
H3AGE3_LATCH	LOC102356949	ENSLACP00000008714	ENSLACP00000005653	Uncharacterized protein.	Netrin 2.	0.896
H3AGE3_LATCH	LOC102357170	ENSLACP00000008714	ENSLACP00000012921	Uncharacterized protein.	Uncharacterized protein.	0.855
H3AGE3_LATCH	NTN1	ENSLACP00000008714	ENSLACP00000007761	Uncharacterized protein.	Netrin 1.	0.896
H3AGE3_LATCH	NTN4	ENSLACP00000008714	ENSLACP00000000565	Uncharacterized protein.	Netrin 4.	0.774
H3AGE3_LATCH	UNC5A	ENSLACP00000008714	ENSLACP00000003003	Uncharacterized protein.	Unc-5 netrin receptor A.	0.877
H3AQC0_LATCH	H3ACM3_LATCH	ENSLACP00000011841	ENSLACP00000007394	Uncharacterized protein.	Ig-like domain-containing protein.	0.900
H3AQC0_LATCH	LOC102346244	ENSLACP00000011841	ENSLACP00000008799	Uncharacterized protein.	Uncharacterized protein.	0.837
H3AQC0_LATCH	LOC102356949	ENSLACP00000011841	ENSLACP00000005653	Uncharacterized protein.	Netrin 2.	0.837
H3AQC0_LATCH	LOC102357170	ENSLACP00000011841	ENSLACP00000012921	Uncharacterized protein.	Uncharacterized protein.	0.855
H3AQC0_LATCH	NTN1	ENSLACP00000011841	ENSLACP00000007761	Uncharacterized protein.	Netrin 1.	0.837