STRINGSTRING
NUP98 protein (Latimeria chalumnae) - STRING interaction network
"NUP98" - Nucleoporin 98kDa in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NUP98Nucleoporin 98kDa (1790 aa)    
Predicted Functional Partners:
SEH1L
SEH1-like (S. cerevisiae) (468 aa)
     
  0.998
SEC13
SEC13 homolog (S. cerevisiae) (320 aa)
     
  0.998
NUP107
Nucleoporin 107kDa (930 aa)
     
  0.990
RAE1
RAE1 RNA export 1 homolog (S. pombe) (394 aa)
     
  0.986
NUP85
Nucleoporin 85kDa (656 aa)
     
  0.984
NUP160
Nucleoporin 160kDa (1326 aa)
     
  0.975
NUP43
Nucleoporin 43kDa (374 aa)
     
  0.974
NUP37
Nucleoporin 37kDa (326 aa)
     
  0.973
NUP133
Nucleoporin 133kDa (1421 aa)
     
  0.961
NXF1
Nuclear RNA export factor 1 (628 aa)
     
  0.951
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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