STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3A079_LATCHUncharacterized protein. (965 aa)    
Predicted Functional Partners:
LOC106704152
Uncharacterized protein.
    
 
 0.752
H3B708_LATCH
Uncharacterized protein.
   
 
 0.732
EFHC2
EF-hand domain containing 2.
    
 
 0.726
CASK
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
    
 0.711
TEKT4
Tektin 4.
   
 
 0.707
EFCAB1
EF-hand calcium binding domain 1.
   
 0.682
C9orf135
Chromosome 9 open reading frame 135.
  
 
   0.678
TEKT2
Tektin 2.
   
 
 0.656
SPAG17
Sperm associated antigen 17.
   
 
 0.654
ARMC3
Armadillo repeat containing 3.
    
 
 0.649
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.