STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PACC1Proton activated chloride channel 1. (357 aa)    
Predicted Functional Partners:
CAMKK1
Calcium/calmodulin dependent protein kinase kinase 1; Belongs to the protein kinase superfamily.
      
 0.813
JADE1
Jade family PHD finger 1.
      
 0.749
LARP1B
La ribonucleoprotein domain family member 1B.
      
 0.733
NENF
Neudesin neurotrophic factor; Belongs to the cytochrome b5 family.
      
 0.559
MANSC1
MANSC domain containing 1.
      
 0.554
KIAA1210
DUF4592 domain-containing protein.
      
 0.552
CYB5D2
Cytochrome b5 domain containing 2; Belongs to the cytochrome b5 family.
      
 0.551
TMEM171
Transmembrane protein 171.
      
 0.551
SMG5
SMG5 nonsense mediated mRNA decay factor.
      
 0.499
RETREG3
Reticulophagy regulator family member 3.
      
 0.470
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.