STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR39U1Short chain dehydrogenase/reductase family 39U member 1. (294 aa)    
Predicted Functional Partners:
STOML1
Stomatin like 1.
  
  
 0.729
HSDL2
Hydroxysteroid dehydrogenase like 2.
  
  
 0.590
NCLN
Nicalin.
      
 0.573
FECH
Ferrochelatase; Belongs to the ferrochelatase family.
  
  
 0.535
TPP2
Tripeptidyl peptidase 2.
      
 0.452
STOM
Stomatin.
  
  
 0.446
XYLB
Xylulokinase.
      
 0.438
LIAS
Lipoyl synthase, mitochondrial; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
     
 0.426
LHFPL2
LHFPL tetraspan subfamily member 2.
      
 0.422
AAGAB
Alpha and gamma adaptin binding protein.
      
 0.420
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.