STRINGSTRING
LIN28A protein (Latimeria chalumnae) - STRING interaction network
"LIN28A" - Lin-28 homolog A (C. elegans) in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIN28ALin-28 homolog A (C. elegans) (205 aa)    
Predicted Functional Partners:
DHX8
DEAH (Asp-Glu-Ala-His) box polypeptide 8 (1211 aa)
     
  0.789
SOX2
SRY (sex determining region Y)-box 2 (315 aa)
     
  0.766
ENSLACG00000012622
POU domain protein (413 aa)
     
  0.764
ENSLACG00000012408
POU domain protein (452 aa)
     
  0.764
PPIE
Peptidylprolyl isomerase E (cyclophilin E); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (302 aa)
   
  0.721
KLF4
Kruppel-like factor 4 (gut) (429 aa)
       
  0.702
TRIM71
Tripartite motif containing 71, E3 ubiquitin protein ligase (841 aa)
     
 
  0.695
YTHDC2
YTH domain containing 2 (1429 aa)
     
  0.674
MYC
V-myc myelocytomatosis viral oncogene homolog (avian) (412 aa)
       
  0.656
ENSLACG00000014135
Uncharacterized protein (585 aa)
     
 
  0.616
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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