Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LIN28ALin-28 homolog A. (205 aa)    
Predicted Functional Partners:
TUT4
Terminal uridylyl transferase 4.
    
 0.965
TUT7
Terminal uridylyl transferase 7.
    
 0.955
EBNA1BP2
EBNA1 binding protein 2.
   
   0.928
SNRPB
Small nuclear ribonucleoprotein-associated protein.
   
  0.926
UPF1
UPF1 RNA helicase and ATPase.
    
 
 0.921
POP1
POP1 homolog, ribonuclease P/MRP subunit.
    
   0.919
RPL3
Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
   0.917
XRN2
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.
    
 
 0.904
LOC102362664
POU domain protein.
   
 0.822
LOC102355666
POU domain protein.
   
 0.822
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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