LIN28A protein (Latimeria chalumnae) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

LIN28A

Lin-28 homolog A. (205 aa)

Predicted Functional Partners:

TUT4

0.766

TUT7

0.738

SALL4

0.659

LOC102362664

0.639

LOC102355666

0.639

NUDT21

0.630

POLR2F

0.620

HNRNPK

0.615

SRSF10

0.615

RPS11

0.614

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HNRNPK	LIN28A	ENSLACP00000006355	ENSLACP00000003069	Heterogeneous nuclear ribonucleoprotein K.	Lin-28 homolog A.	0.615
HNRNPK	NUDT21	ENSLACP00000006355	ENSLACP00000017396	Heterogeneous nuclear ribonucleoprotein K.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.563
HNRNPK	POLR2F	ENSLACP00000006355	ENSLACP00000004420	Heterogeneous nuclear ribonucleoprotein K.	RNA polymerase II subunit F.	0.640
HNRNPK	SRSF10	ENSLACP00000006355	ENSLACP00000023310	Heterogeneous nuclear ribonucleoprotein K.	Serine and arginine rich splicing factor 10.	0.678
LIN28A	HNRNPK	ENSLACP00000003069	ENSLACP00000006355	Lin-28 homolog A.	Heterogeneous nuclear ribonucleoprotein K.	0.615
LIN28A	LOC102355666	ENSLACP00000003069	ENSLACP00000014342	Lin-28 homolog A.	POU domain protein.	0.639
LIN28A	LOC102362664	ENSLACP00000003069	ENSLACP00000014097	Lin-28 homolog A.	POU domain protein.	0.639
LIN28A	NUDT21	ENSLACP00000003069	ENSLACP00000017396	Lin-28 homolog A.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.630
LIN28A	POLR2F	ENSLACP00000003069	ENSLACP00000004420	Lin-28 homolog A.	RNA polymerase II subunit F.	0.620
LIN28A	RPS11	ENSLACP00000003069	ENSLACP00000002129	Lin-28 homolog A.	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.614
LIN28A	SALL4	ENSLACP00000003069	ENSLACP00000015780	Lin-28 homolog A.	Spalt like transcription factor 4.	0.659
LIN28A	SRSF10	ENSLACP00000003069	ENSLACP00000023310	Lin-28 homolog A.	Serine and arginine rich splicing factor 10.	0.615
LIN28A	TUT4	ENSLACP00000003069	ENSLACP00000012212	Lin-28 homolog A.	Terminal uridylyl transferase 4.	0.766
LIN28A	TUT7	ENSLACP00000003069	ENSLACP00000001834	Lin-28 homolog A.	Terminal uridylyl transferase 7.	0.738
LOC102355666	LIN28A	ENSLACP00000014342	ENSLACP00000003069	POU domain protein.	Lin-28 homolog A.	0.639
LOC102355666	SALL4	ENSLACP00000014342	ENSLACP00000015780	POU domain protein.	Spalt like transcription factor 4.	0.862
LOC102362664	LIN28A	ENSLACP00000014097	ENSLACP00000003069	POU domain protein.	Lin-28 homolog A.	0.639
LOC102362664	SALL4	ENSLACP00000014097	ENSLACP00000015780	POU domain protein.	Spalt like transcription factor 4.	0.862
NUDT21	HNRNPK	ENSLACP00000017396	ENSLACP00000006355	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	Heterogeneous nuclear ribonucleoprotein K.	0.563
NUDT21	LIN28A	ENSLACP00000017396	ENSLACP00000003069	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	Lin-28 homolog A.	0.630