STRINGSTRING
SHISA9 protein (Latimeria chalumnae) - STRING interaction network
"SHISA9" - Shisa homolog 9 (Xenopus laevis) in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHISA9Shisa homolog 9 (Xenopus laevis) (172 aa)    
Predicted Functional Partners:
GDAP1L1
Ganglioside induced differentiation associated protein 1-like 1 (365 aa)
     
   
  0.498
CDIP1
Cell death-inducing p53 target 1 (210 aa)
           
  0.494
MKL2
MKL/myocardin-like 2 (1113 aa)
           
  0.491
RHBDF1
Rhomboid 5 homolog 1 (Drosophila) (805 aa)
           
  0.487
MGRN1
Mahogunin ring finger 1, E3 ubiquitin protein ligase (532 aa)
           
  0.483
SNRNP25
Small nuclear ribonucleoprotein 25kDa (U11/U12) (171 aa)
           
  0.473
DDX5
DEAD (Asp-Glu-Ala-Asp) box helicase 5 (512 aa)
           
  0.457
UBE2O
Ubiquitin-conjugating enzyme E2O (1313 aa)
           
  0.457
MYH10
Myosin, heavy chain 10, non-muscle (2012 aa)
           
  0.452
POLR3K
Polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (108 aa)
           
  0.449
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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