STRINGSTRING
COL6A5 protein (Latimeria chalumnae) - STRING interaction network
"COL6A5" - Uncharacterized protein in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL6A5Uncharacterized protein (1554 aa)    
Predicted Functional Partners:
NEURL
Neuralized homolog (Drosophila) (568 aa)
       
  0.954
NEURL1B
Neuralized homolog 1B (Drosophila) (534 aa)
       
  0.954
ITGB7
Integrin, beta 7 (778 aa)
     
  0.929
ITGB5
Integrin, beta 5 (697 aa)
     
  0.929
ITGB4
Integrin, beta 4 (1787 aa)
     
  0.929
ENSLACG00000009401
Integrin beta (769 aa)
     
  0.929
ITGB1
Integrin beta-1 (570 aa)
     
  0.929
ITGB8
Integrin, beta 8 (637 aa)
     
  0.929
ENSLACG00000001067
Integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12) (822 aa)
     
  0.929
ITGB6
Integrin, beta 6 (675 aa)
     
  0.929
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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