STRINGSTRING
USP49 protein (Latimeria chalumnae) - STRING interaction network
"USP49" - Ubiquitin specific peptidase 49 in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP49Ubiquitin specific peptidase 49 (701 aa)    
Predicted Functional Partners:
ATXN7L3
Ataxin 7-like 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription (351 aa)
     
  0.923
ENSLACG00000005336
Uncharacterized protein (245 aa)
     
  0.922
KAT2A
K(lysine) acetyltransferase 2A (740 aa)
     
  0.847
CECR2
Cat eye syndrome chromosome region, candidate 2 (1363 aa)
     
  0.847
KAT2B
K(lysine) acetyltransferase 2B (793 aa)
     
  0.847
SUPT3H
Suppressor of Ty 3 homolog (S. cerevisiae) (329 aa)
     
  0.844
ATXN7L1
Ataxin 7-like 1 (836 aa)
     
  0.829
ATXN7
Ataxin 7 (575 aa)
     
  0.829
TADA3
Transcriptional adaptor 3 (312 aa)
     
  0.824
UBA52
Uncharacterized protein (128 aa)
     
  0.808
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: Actinistia, Choanichthyes, Coelacanthidae, Coelacanthiformes, Coelacanthimorpha, Crossopterygii, L. chalumnae, Latimeria, Latimeria chalumnae, Latimeriidae, coelacanth, coelacanths, lobe-finned fishes
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