Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
JOSD2Josephin domain containing 2. (220 aa)    
Predicted Functional Partners:
RPS27A
Ribosomal protein S27a.
    
  0.902
LOC102350907
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.847
KXD1
Ubiquitin-like domain-containing protein.
    
  0.847
YOD1
YOD1 deubiquitinase.
      
 0.790
TYSND1
Trypsin domain containing 1.
    
   0.725
TRAPPC2B
Trafficking protein particle complex 2B.
    
   0.700
LOC102346166
Ubiquitin-like domain-containing protein.
    
  0.666
USP5
Ubiquitin carboxyl-terminal hydrolase.
   
  
 0.663
CTNNB1
Catenin beta 1.
    
   0.649
OTUD5
OTU deubiquitinase 5.
      
 0.641
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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