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STRINGSTRING
PKD1L2 protein (Latimeria chalumnae) - STRING interaction network
"PKD1L2" - annotation not available in Latimeria chalumnae
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PKD1L2annotation not available (2422 aa)    
Predicted Functional Partners:
ATP5B
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane (312 aa)
       
 
  0.693
BCO1
Beta-carotene oxygenase 1 (531 aa)
           
  0.636
STAM
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 (537 aa)
       
 
  0.609
STAM2
Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2 (517 aa)
       
 
  0.609
TMA16
Translation machinery associated 16 homolog (S. cerevisiae) (199 aa)
           
  0.607
NTHL1
Endonuclease III-like protein 1; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N- glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3’ to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family (350 aa)
           
  0.548
TRAPPC1
Trafficking protein particle complex 1 (145 aa)
           
  0.538
NPHP4
Nephronophthisis 4 (1207 aa)
     
   
  0.499
B3GNT2
Hexosyltransferase; UDP-GlcNAc-betaGal beta-1,3-N-acetylglucosaminyltransferase 2 (397 aa)
           
  0.493
EVA1C
Eva-1 homolog C (C. elegans) (388 aa)
       
 
  0.492
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, Latimeria chalumnae, coelacanth
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