Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
H3A0G5_LATCHUncharacterized protein. (2422 aa)    
Predicted Functional Partners:
PKD2L1
Polycystin 2 like 1, transient receptor potential cation channel.
    
 
 0.955
TTC17
Tetratricopeptide repeat domain 17.
   
  
 0.792
PKD2
Polycystin 2, transient receptor potential cation channel.
    
 
 0.773
PKD2L2
Polycystin 2 like 2, transient receptor potential cation channel.
    
 
 0.692
PKDREJ
Polycystin family receptor for egg jelly.
    
 
 0.628
TTC19
Tetratricopeptide repeat domain 19.
   
  
 0.625
TMEM115
Transmembrane protein 115.
      
 0.594
BCO1
Beta-carotene oxygenase 1.
      
 0.591
GCSH
Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.
 
    
 0.562
DAW1
Dynein assembly factor with WD repeats 1.
      
 0.560
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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