Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PCDH10Protocadherin 10. (996 aa)    
Predicted Functional Partners:
TAFA5
TAFA chemokine like family member 5.
      
 0.657
ASIC2
Uncharacterized protein; Belongs to the amiloride-sensitive sodium channel (TC 1.A.6) family.
      
 0.652
H3AEB9_LATCH
Cadherin_tail domain-containing protein.
 
      0.612
NPTX2
Neuronal pentraxin 2.
      
 0.525
H3BG57_LATCH
Down syndrome cell adhesion molecule like 1.
    
 0.491
DSCAML1
Uncharacterized protein.
    
 0.491
SERPINE2
Serpin family E member 2; Belongs to the serpin family.
     
 0.447
FANCL
FA complementation group L.
     
 0.430
ADAM9
ADAM metallopeptidase domain 9.
     
 0.421
SNAP47
Synaptosome associated protein 47.
     
 0.421
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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