STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TPM3Tropomyosin 3; Belongs to the tropomyosin family. (286 aa)    
Predicted Functional Partners:
TNNT1
Troponin T1, slow skeletal type.
   
 0.845
TNNT2
Troponin T2, cardiac type.
   
 0.845
MYL1
Myosin light chain 1.
   
 0.834
LOC102361066
EF-hand domain-containing protein.
   
 0.834
TNNT3
Troponin T3, fast skeletal type.
   
 0.833
TNNI1
Troponin I1, slow skeletal type.
   
 0.796
TNNI2
Troponin I2, fast skeletal type.
   
 0.792
MYH7
Myosin heavy chain 7; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.777
GATD1
Glutamine amidotransferase like class 1 domain containing 1.
   
 0.776
MYLPF
Myosin light chain, phosphorylatable, fast skeletal muscle.
   
 0.774
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.