STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TOM1Target of myb1 membrane trafficking protein; Belongs to the TOM1 family. (494 aa)    
Predicted Functional Partners:
MYO6
Myosin VI; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 
 0.832
TOLLIP
Toll interacting protein.
    
 
 0.784
HMGXB4
HMG-box containing 4.
 
    
 0.663
RASD2
RASD family member 2.
    
 0.655
MET
MET proto-oncogene, receptor tyrosine kinase.
    
  0.648
ARF6
ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.
    
 0.645
LOC102349333
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
    
 0.645
LOC102354752
VPS9 domain-containing protein.
     
 0.644
RABGEF1
RAB guanine nucleotide exchange factor (GEF) 1.
     
 0.644
FOXRED2
FAD dependent oxidoreductase domain containing 2.
   
  
 0.599
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.