STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCDH15Protocadherin related 15. (1123 aa)    
Predicted Functional Partners:
H3ANB1_LATCH
Uncharacterized protein.
 
      0.900
USH1C
USH1 protein network component harmonin.
   
 
 0.801
CDHR2
Cadherin related family member 2.
   
0.735
CDH23
Uncharacterized protein.
   
0.733
H3AUU3_LATCH
Cadherin-related 23.
   
0.727
TMC2
Transmembrane channel-like protein.
    
 0.668
H3A8Y0_LATCH
CA domain-containing protein.
   
0.655
H3AMW8_LATCH
Uncharacterized protein.
   
0.655
LHFPL5
LHFPL tetraspan subfamily member 5.
   
 0.628
LHFPL4
LHFPL tetraspan subfamily member 4.
   
 0.628
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.