STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PEPDPeptidase D; Belongs to the peptidase M24B family. (261 aa)    
Predicted Functional Partners:
ERCC2
ERCC excision repair 2, TFIIH core complex helicase subunit.
   
  
 0.799
H3ALV1_LATCH
Uncharacterized protein.
   
  
 0.706
RAN
GTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
      
 0.705
H3AC16_LATCH
X-ray repair complementing defective repair in Chinese hamster cells 1.
      
 0.581
TNNT3
Troponin T3, fast skeletal type.
      
 0.554
ELAC1
ElaC ribonuclease Z 1.
     
 0.554
MIPEP
Mitochondrial intermediate peptidase.
   
 
 0.550
SUCLA2
Succinate-CoA ligase ADP-forming beta subunit.
   
 
 0.521
H3AA72_LATCH
Si:ch211-153b23.3.
    
  0.508
TNNI1
Troponin I1, slow skeletal type.
      
 0.508
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.